Genetic distance of SARS coronavirus from the recent natural case
Identifieur interne : 003E89 ( Main/Exploration ); précédent : 003E88; suivant : 003E90Genetic distance of SARS coronavirus from the recent natural case
Auteurs : Zhi-Gang Wang [République populaire de Chine] ; Shu-Ping Xu [République populaire de Chine] ; Yan-Jun Zhang [République populaire de Chine] ; Qi-Yu Bao [République populaire de Chine]Source :
- Veterinary Microbiology [ 0378-1135 ] ; 2006.
Descripteurs français
- KwdFr :
- Analyse de séquence, Animaux, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires (), Glycoprotéines membranaires (génétique), Humains, Infections à Coronaviridae (virologie), Phylogénie, Protéines de l'enveloppe virale (), Protéines de l'enveloppe virale (génétique), Substitution d'acide aminé, Séquence d'acides aminés, Variation génétique, Virus du SRAS (), Virus du SRAS (génétique).
- MESH :
- génétique : Glycoprotéines membranaires, Protéines de l'enveloppe virale, Virus du SRAS.
- virologie : Infections à Coronaviridae.
- Analyse de séquence, Animaux, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires, Humains, Phylogénie, Protéines de l'enveloppe virale, Substitution d'acide aminé, Séquence d'acides aminés, Variation génétique, Virus du SRAS.
English descriptors
- KwdEn :
- Amino Acid Sequence, Amino Acid Substitution, Animals, Coronaviridae Infections (virology), Genetic Variation, Humans, Membrane Glycoproteins (chemistry), Membrane Glycoproteins (genetics), Phylogeny, SARS Virus (classification), SARS Virus (genetics), Sequence Analysis, Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (chemistry), Viral Envelope Proteins (genetics).
- MESH :
- chemical , chemistry : Membrane Glycoproteins, Viral Envelope Proteins.
- chemical , genetics : Membrane Glycoproteins, Viral Envelope Proteins.
- classification : SARS Virus.
- genetics : SARS Virus.
- virology : Coronaviridae Infections.
- Amino Acid Sequence, Amino Acid Substitution, Animals, Genetic Variation, Humans, Phylogeny, Sequence Analysis, Spike Glycoprotein, Coronavirus.
Abstract
Phylogenetic analysis of SARS coronavirus isolates based on the spike gene and protein sequence using Neighbor-Joining, maximum likelihood and Bayesian inference methods indicated that a recent human SARS-CoV isolate was closer to some human SARS-CoV isolates from earlier epidemic phase than to the SARS-CoV-like viruses isolated from wild animals during previous epidemic phase. A reasonable judgment based on phylogenetic relationship and sequence variations it is likely that the recent human SARS-CoV isolate is closer to an unknown SARS-CoV predecessor.
Url:
DOI: 10.1016/j.vetmic.2006.10.022
PubMed: 17141432
PubMed Central: 7117388
Affiliations:
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Le document en format XML
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Ping" sort="Xu, Shu Ping" uniqKey="Xu S" first="Shu-Ping" last="Xu">Shu-Ping Xu</name><affiliation wicri:level="1"><nlm:aff id="aff2">College of Biosystems Engineering and Food Science, University of Zhejiang, Hangzhou 310029, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Biosystems Engineering and Food Science, University of Zhejiang, Hangzhou 310029</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhang, Yan Jun" sort="Zhang, Yan Jun" uniqKey="Zhang Y" first="Yan-Jun" last="Zhang">Yan-Jun Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1">Zhejiang Provincial Center for Disease Prevention and Control, 17 Laozhedazhi Road, Hangzhou 310009, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Zhejiang Provincial Center for Disease Prevention and Control, 17 Laozhedazhi Road, Hangzhou 310009</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Bao, Qi Yu" sort="Bao, Qi Yu" uniqKey="Bao Q" first="Qi-Yu" last="Bao">Qi-Yu Bao</name><affiliation wicri:level="1"><nlm:aff id="aff3">Institute of Biomedical Informatics, Wenzhou Medical College, Wenzhou 325000, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Biomedical Informatics, Wenzhou Medical College, Wenzhou 325000</wicri:regionArea><wicri:noRegion>Wenzhou 325000</wicri:noRegion></affiliation></author></analytic><series><title level="j">Veterinary Microbiology</title><idno type="ISSN">0378-1135</idno><idno type="eISSN">1873-2542</idno><imprint><date when="2006">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Amino Acid Substitution</term><term>Animals</term><term>Coronaviridae Infections (virology)</term><term>Genetic Variation</term><term>Humans</term><term>Membrane Glycoproteins (chemistry)</term><term>Membrane Glycoproteins (genetics)</term><term>Phylogeny</term><term>SARS Virus (classification)</term><term>SARS Virus (genetics)</term><term>Sequence Analysis</term><term>Spike Glycoprotein, Coronavirus</term><term>Viral Envelope Proteins (chemistry)</term><term>Viral Envelope Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence</term><term>Animaux</term><term>Glycoprotéine de spicule des coronavirus</term><term>Glycoprotéines membranaires ()</term><term>Glycoprotéines membranaires (génétique)</term><term>Humains</term><term>Infections à Coronaviridae (virologie)</term><term>Phylogénie</term><term>Protéines de l'enveloppe virale ()</term><term>Protéines de l'enveloppe virale (génétique)</term><term>Substitution d'acide aminé</term><term>Séquence d'acides aminés</term><term>Variation génétique</term><term>Virus du SRAS ()</term><term>Virus du SRAS (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Glycoprotéines membranaires</term><term>Protéines de l'enveloppe virale</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronaviridae Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Amino Acid Substitution</term><term>Animals</term><term>Genetic Variation</term><term>Humans</term><term>Phylogeny</term><term>Sequence Analysis</term><term>Spike Glycoprotein, Coronavirus</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term><term>Animaux</term><term>Glycoprotéine de spicule des coronavirus</term><term>Glycoprotéines membranaires</term><term>Humains</term><term>Phylogénie</term><term>Protéines de l'enveloppe virale</term><term>Substitution d'acide aminé</term><term>Séquence d'acides aminés</term><term>Variation génétique</term><term>Virus du SRAS</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Phylogenetic analysis of SARS coronavirus isolates based on the spike gene and protein sequence using Neighbor-Joining, maximum likelihood and Bayesian inference methods indicated that a recent human SARS-CoV isolate was closer to some human SARS-CoV isolates from earlier epidemic phase than to the SARS-CoV-like viruses isolated from wild animals during previous epidemic phase. A reasonable judgment based on phylogenetic relationship and sequence variations it is likely that the recent human SARS-CoV isolate is closer to an unknown SARS-CoV predecessor.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Chen, W" uniqKey="Chen W">W. Chen</name></author><author><name sortKey="Yan, M" uniqKey="Yan M">M. Yan</name></author><author><name sortKey="Yang, L" uniqKey="Yang L">L. Yang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wu, C Y" uniqKey="Wu C">C.Y. Wu</name></author><author><name sortKey="Jan, J T" uniqKey="Jan J">J.T. Jan</name></author><author><name sortKey="Ma, S H" uniqKey="Ma S">S.H. Ma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guan, Y" uniqKey="Guan Y">Y. Guan</name></author><author><name sortKey="Zheng, B J" uniqKey="Zheng B">B.J. Zheng</name></author><author><name sortKey="He, Y Q" uniqKey="He Y">Y.Q. He</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Song, H D" uniqKey="Song H">H.D. Song</name></author><author><name sortKey="Tu, C C" uniqKey="Tu C">C.C. Tu</name></author><author><name sortKey="Zhang, G W" uniqKey="Zhang G">G.W. Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huelsenbeck, J P" uniqKey="Huelsenbeck J">J.P. Huelsenbeck</name></author><author><name sortKey="Ronquist, F" uniqKey="Ronquist F">F. Ronquist</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Li, L J" uniqKey="Li L">L.J. Li</name></author><author><name sortKey="Wang, Z G" uniqKey="Wang Z">Z.G. Wang</name></author><author><name sortKey="Lu, Y Y" uniqKey="Lu Y">Y.Y. Lu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Posada, D" uniqKey="Posada D">D. Posada</name></author><author><name sortKey="Crandall, K A" uniqKey="Crandall K">K.A. Crandall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ruan, Y J" uniqKey="Ruan Y">Y.J. Ruan</name></author><author><name sortKey="Wei, C L" uniqKey="Wei C">C.L. Wei</name></author><author><name sortKey="Ee, A L" uniqKey="Ee A">A.L. Ee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stadler, K" uniqKey="Stadler K">K. Stadler</name></author><author><name sortKey="Masignani, V" uniqKey="Masignani V">V. Masignani</name></author><author><name sortKey="Eickmann, M" uniqKey="Eickmann M">M. Eickmann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stavrinides, J" uniqKey="Stavrinides J">J. Stavrinides</name></author><author><name sortKey="Guttman, D S" uniqKey="Guttman D">D.S. Guttman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Swofford, D L" uniqKey="Swofford D">D.L. Swofford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thompson, J D" uniqKey="Thompson J">J.D. Thompson</name></author><author><name sortKey="Higgins, D G" uniqKey="Higgins D">D.G. Higgins</name></author><author><name sortKey="Gibson, T J" uniqKey="Gibson T">T.J. Gibson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tsui, S K W" uniqKey="Tsui S">S.K.W. Tsui</name></author><author><name sortKey="Chim, S S C" uniqKey="Chim S">S.S.C. Chim</name></author><author><name sortKey="Dennis, Y M L" uniqKey="Dennis Y">Y.M.L. Dennis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Z G" uniqKey="Wang Z">Z.G. Wang</name></author><author><name sortKey="Li, L J" uniqKey="Li L">L.J. Li</name></author><author><name sortKey="Luo, Y" uniqKey="Luo Y">Y. Luo</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, G P" uniqKey="Zhao G">G.P. Zhao</name></author><author><name sortKey="He, J F" uniqKey="He J">J.F. He</name></author><author><name sortKey="Peng, G W" uniqKey="Peng G">G.W. Peng</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Zhejiang</li></region><settlement><li>Hangzhou</li></settlement></list><tree><country name="République populaire de Chine"><region name="Zhejiang"><name sortKey="Wang, Zhi Gang" sort="Wang, Zhi Gang" uniqKey="Wang Z" first="Zhi-Gang" last="Wang">Zhi-Gang Wang</name></region><name sortKey="Bao, Qi Yu" sort="Bao, Qi Yu" uniqKey="Bao Q" first="Qi-Yu" last="Bao">Qi-Yu Bao</name><name sortKey="Xu, Shu Ping" sort="Xu, Shu Ping" uniqKey="Xu S" first="Shu-Ping" last="Xu">Shu-Ping Xu</name><name sortKey="Zhang, Yan Jun" sort="Zhang, Yan Jun" uniqKey="Zhang Y" first="Yan-Jun" last="Zhang">Yan-Jun Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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